 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10026086m |
| Common Name | EUTSA_v10026086mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
LBD |
| Protein Properties |
Length: 247aa MW: 27063.8 Da PI: 7.6456 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10026086m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 96.3 | 3.3e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q
Thhalv10026086m 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPELNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQ 95
6*********************9999777889************************************************************** PP
DUF260 90 lkaelall 97
+++e++l+
Thhalv10026086m 96 AAVETVLR 103
**998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPELNR 60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPM SDLLESPSLI 120
SSDDSSEMIC TDIRRDVSRN NQNHHCRFSS SRSKLNTTEI EPVDRKRVKT DRYGSDLDLQ 180
LNHGLALTFP AIPVPFIPPL PFSKAGNGDG PGSPSEESVT TSCWENGLNG DTYRNKRETK 240
LLNLFV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473874 | 1e-142 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. |
| GenBank | AY072144 | 1e-142 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
| GenBank | AY122976 | 1e-142 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
