PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026063m
Common NameEUTSA_v10026063mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 253aa    MW: 29089.5 Da    PI: 10.3722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026063mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed+ l ++vkq+G+++W+ Ia+++  gR++k+c++rw++ 
  Thhalv10026063m 19 RGHWRPVEDDNLRKLVKQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
                     899****************************9.************96 PP
2Myb_DNA-binding53.65.3e-1771114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l+ a++  G++ W++Iar+++ gRt++ +k++++ 
  Thhalv10026063m  71 KKPFTEEEEERLLTAHRIQGNR-WASIARMFP-GRTDNAVKNHFHV 114
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.021469IPR017930Myb domain
SuperFamilySSF466891.72E-2818112IPR009057Homeodomain-like
SMARTSM007172.8E-141867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-252072IPR009057Homeodomain-like
CDDcd001671.78E-132263No hitNo description
PfamPF139211.6E-162282No hitNo description
SMARTSM007172.0E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129417.5170120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-1973118IPR009057Homeodomain-like
CDDcd001677.02E-682113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEMSRGSNSF DNKKTSCQRG HWRPVEDDNL RKLVKQYGPK NWNFIAQHLY GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLTAHRIQG NRWASIARMF PGRTDNAVKN HFHVIMARRK  120
RESFSSTATS TFNQSSWHNI LSPSSSLTML NRSQFGLWRY QKDKSRGLWP YAFVSAPSRD  180
AQFGSSSISN VRQEFSLERR KSKELLVDHH DAFHAAIPDQ EKNSGEDGPS MGDDSEKKNV  240
TFIDFLGVGL VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33191197107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026063m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412358.10.0transcription factor MYB54
TrEMBLV4P3400.0V4P340_EUTSA; Uncharacterized protein
STRINGXP_006412358.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-158myb domain protein 69