PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026054m
Common NameEUTSA_v10026054mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 255aa    MW: 29624.2 Da    PI: 4.8988
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026054mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48.2e-112425395
                     EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ++k++++++++GW +Fv++n L +gDf++F ++g++ f   v+
  Thhalv10026054m  2 KRKQDEVYFEQGWVKFVEDNSLSDGDFLTFVYNGDRIF--EVS 42
                     577888**************************998877..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.055147IPR003340B3 DNA binding domain
PfamPF023628.4E-8240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-11249IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-7444No hitNo description
SuperFamilySSF1019362.16E-11449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-6155250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-5164251IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKRKQDEVYF EQGWVKFVED NSLSDGDFLT FVYNGDRIFE VSIYGPDGCK EVRAVTEADD  60
DEEDSSNDTD AISESEVVTT IPRSKNKGKS KVGVVEESDD DEEDSIYTDT ETETDTGFPG  120
KSKLTEDVDD SVKLQRERVK PKIKNPEAYL DNPRNIYFET GVKKRIYELL IHAQLVKDYS  180
LKFEKNIYYI DNHKNGKLEA KTTMWKDQRV YIKKWQRICK RNSLKKEDGI LCELFRRQGL  240
VYAVKVHIIR EKDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026054m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412226.20.0B3 domain-containing protein At4g34400
TrEMBLV4MBB80.0V4MBB8_EUTSA; Uncharacterized protein
STRINGXP_006412226.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.12e-59B3 family protein