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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10025867m |
| Common Name | EUTSA_v10025867mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
BBR-BPC |
| Protein Properties |
Length: 296aa MW: 33202.5 Da PI: 9.6898 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10025867m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 319.3 | 1.2e-97 | 1 | 295 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75
m++ g++e r k+ yy+ ++++l +++++ms++aerda+++ern a+++kk+a+a+rd+a+ qrdkal+er++a++
Thhalv10025867m 1 MESGGQYEngRYKPdYYKgtesvwnmmpqhqikeQHNALV--MNKKIMSILAERDAAVKERNEAVAAKKEALAARDEALEQRDKALSERDNAIM 92
888999888999999999*********9887765446666..99************************************************** PP
GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
er+++l al+++en+l+ l+ + g+ ++ ++e++ + pi++ ++ea +++ k r+k+ k+++++k kk
Thhalv10025867m 93 ERESALNALQYRENNLNYILS--CARRGGS----------------QSCVTEESHLPDPSPISTIPPEAANTRPAK---RKKQSKQETRSKGKK 165
**************9654441..1111111................122235667778999*******99999988...666777777788888 PP
GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263
+e+ +++v++++ ++ +++++s d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS++
Thhalv10025867m 166 VGEDLNRQVASPG--KKCRKDWDSNDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGS 257
8999*********..56***************************************************************************** PP
GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+f++lL++La++G++ls pvDLkd+WA+HGtn+++ti+
Thhalv10025867m 258 VFSRLLSRLAGQGHELSSPVDLKDYWARHGTNRYITIK 295
*************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MESGGQYENG RYKPDYYKGT ESVWNMMPQH QIKEQHNALV MNKKIMSILA ERDAAVKERN 60
EAVAAKKEAL AARDEALEQR DKALSERDNA IMERESALNA LQYRENNLNY ILSCARRGGS 120
QSCVTEESHL PDPSPISTIP PEAANTRPAK RKKQSKQETR SKGKKVGEDL NRQVASPGKK 180
CRKDWDSNDV GLNLVTFDET TMPVPMCTCT GTARQCYKWG NGGWQSSCCT TTLSQYPLPQ 240
MPNKRHSRMG GRKMSGSVFS RLLSRLAGQG HELSSPVDLK DYWARHGTNR YITIK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF633603 | 0.0 | EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds. |
