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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Thhalv10025845m |
Common Name | EUTSA_v10025845mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family |
SRS |
Protein Properties |
Length: 300aa MW: 32443.4 Da PI: 6.3376 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Thhalv10025845m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 223.6 | 3.8e-69 | 80 | 228 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++ + ++ +kr+r+ +ss++l+s +
Thhalv10025845m 80 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTYGGGDGSGSSVPKRHRDI-----PGTSSSRLPSDS 168
67899***********************************************************9**********97.....566778999999 PP
DUF702 96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
+ e+e +s+P+evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
Thhalv10025845m 169 TGLEMEEASFPPEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 228
9*****************************8899************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MSGIFSLGGN NNNNGEEEEE ENQQQQKTNW VWYRNTNPSS SLWQIPPEQQ MLMHHHPQQQ 60 SLDLYPGHQI DISDLATSSR SITISCRDCG NQAKKDCTHM RCRTCCKSRG FDCSTHVRST 120 WIPVARRRER QQQLHMSTYG GGDGSGSSVP KRHRDIPGTS SSRLPSDSTG LEMEEASFPP 180 EVSSDALFRC VKMSGVDDGG DGQYAYQTTV NIGGHLFKGI LYDQGPESSY ISGNSGGSDH 240 QSSSAGGGNP FKAMADGGGG GGGSSAMFVD PNSGGYYSSN MTTMFVPPGT QFYQNPPRS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205265 | 0.0 | GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G36260.1 | 1e-125 | Lateral root primordium (LRP) protein-related |