PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10025822m | ||||||||
Common Name | EUTSA_v10025822mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bZIP | ||||||||
Protein Properties | Length: 305aa MW: 33403.6 Da PI: 10.72 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.5 | 1.2e-07 | 224 | 245 | 5 | 26 |
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r +r++kNRe+A rsR+RK++ Thhalv10025822m 224 RRHKRMIKNRESAARSRARKQE 245 699******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-6 | 216 | 295 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.2E-11 | 220 | 285 | No hit | No description |
SuperFamily | SSF57959 | 7.74E-7 | 224 | 284 | No hit | No description |
CDD | cd14707 | 5.51E-24 | 224 | 289 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 227 | 242 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MLSSAKHQRN HRVSATNKNK TLNQVSSISS SSPSSSSSSS SSSSSSSFST SFSPSPIHSQ 60 DSQAHKRSLV TMEEVWKDIN LGSIHHLNRH SQHPQHSQEP RFRGHNHQSQ NPNSIFQDFL 120 NRPLNQEPTI PTSLTMGSAS NGDTTTVTAL FSSSPLAPPA TVLSLNSGAG FEFLDSQDPL 180 VTPSSNLHNL ANVSSFNTPF DALVTSTCFG KKRGQESNEG SGNRRHKRMI KNRESAARSR 240 ARKQECFLGF DSHLQAYTNE LELEVAHLQA ENARLKRQQD QLRTAAANQQ PKKNTLQRSS 300 TAPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10025822m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002687 | 1e-163 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | GQ177109 | 1e-163 | GQ177109.1 Arabidopsis thaliana ecotype Ag-0 FD gene, complete sequence. | |||
GenBank | GQ177110 | 1e-163 | GQ177110.1 Arabidopsis thaliana ecotype Cvi-0 FD gene, complete sequence. | |||
GenBank | GQ177111 | 1e-163 | GQ177111.1 Arabidopsis thaliana ecotype C24 FD gene, complete sequence. | |||
GenBank | GQ177113 | 1e-163 | GQ177113.1 Arabidopsis thaliana ecotype Ws-0 FD gene, complete sequence. | |||
GenBank | GQ177114 | 1e-163 | GQ177114.1 Arabidopsis thaliana ecotype Wei-0 FD gene, complete sequence. | |||
GenBank | GQ177115 | 1e-163 | GQ177115.1 Arabidopsis thaliana ecotype An-1 FD gene, complete sequence. | |||
GenBank | GQ177116 | 1e-163 | GQ177116.1 Arabidopsis thaliana ecotype Bay-0 FD gene, complete sequence. | |||
GenBank | GQ177117 | 1e-163 | GQ177117.1 Arabidopsis thaliana ecotype Br-0 FD gene, complete sequence. | |||
GenBank | GQ177118 | 1e-163 | GQ177118.1 Arabidopsis thaliana ecotype Ct-1 FD gene, complete sequence. | |||
GenBank | GQ177119 | 1e-163 | GQ177119.1 Arabidopsis thaliana ecotype Edi-0 FD gene, complete sequence. | |||
GenBank | GQ177120 | 1e-163 | GQ177120.1 Arabidopsis thaliana ecotype Ei-2 FD gene, complete sequence. | |||
GenBank | GQ177121 | 1e-163 | GQ177121.1 Arabidopsis thaliana ecotype Ga-0 FD gene, complete sequence. | |||
GenBank | GQ177122 | 1e-163 | GQ177122.1 Arabidopsis thaliana ecotype Gy-0 FD gene, complete sequence. | |||
GenBank | GQ177124 | 1e-163 | GQ177124.1 Arabidopsis thaliana ecotype Ll-0 FD gene, complete sequence. | |||
GenBank | GQ177125 | 1e-163 | GQ177125.1 Arabidopsis thaliana ecotype Mrk-0 FD gene, complete sequence. | |||
GenBank | GQ177126 | 1e-163 | GQ177126.1 Arabidopsis thaliana ecotype Ms-0 FD gene, complete sequence. | |||
GenBank | GQ177127 | 1e-163 | GQ177127.1 Arabidopsis thaliana ecotype Mt-0 FD gene, complete sequence. | |||
GenBank | GQ177128 | 1e-163 | GQ177128.1 Arabidopsis thaliana ecotype Nok-3 FD gene, complete sequence. | |||
GenBank | GQ177131 | 1e-163 | GQ177131.1 Arabidopsis thaliana ecotype Wt-5 FD gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024005340.1 | 0.0 | protein FD | ||||
Swissprot | Q84JK2 | 1e-141 | FD_ARATH; Protein FD | ||||
TrEMBL | V4LSE7 | 0.0 | V4LSE7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006412047.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-141 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10025822m |
Entrez Gene | 18028420 |