PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025819m
Common NameEUTSA_v10025819mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 305aa    MW: 33927.1 Da    PI: 9.4155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025819mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.6e-34592001128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tk 79 
                      lp+G++F+Ptd+e++ e+L+ kv+++       ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+       + 
  Thhalv10025819m  59 LPAGVKFDPTDQEVL-EHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVTKDGTLRHFFHRPSKAYTTGTRKRRKvhtdsevAG 150
                      799**********99.99******9996665442222223554445**********.555667888******************7566665555 PP

              NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Thhalv10025819m 151 ETRWHKTGKTRPVLA-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
                      889************.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-3753219IPR003441NAC domain
PROSITE profilePS5100533.5559219IPR003441NAC domain
PfamPF023653.4E-1560200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTWCNDRSDV QTVERIIPSP AAADSPAASF PVSCHKTCPS CGHNFKFHEQ AGIHDLPGLP  60
AGVKFDPTDQ EVLEHLEGKV RDDARKLHPL IDEFIRTIDG ENGICYTHPE KLPGVTKDGT  120
LRHFFHRPSK AYTTGTRKRR KVHTDSEVAG ETRWHKTGKT RPVLAGGRVR GYKKILVLYT  180
NYGKQKKPEK TNWVMHQYHL GTNEEEKEGE LVVSKVFYQT QPRQCGGSVA AAATAKERPY  240
LHGHHLGGGG GRHLHYHLHH NNGKFKSNGG EGSGEYYNNI PAIISFNQTG IQNHLVHGSQ  300
PFIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-125920015140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025819m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566580.0DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412946.10.0NAC domain-containing protein 73
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLV4MD630.0V4MD63_EUTSA; Uncharacterized protein
STRINGXP_006412946.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-174NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]