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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10025811m | ||||||||
Common Name | EUTSA_v10025811mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 307aa MW: 34733.4 Da PI: 4.5413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 7.9e-05 | 198 | 236 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L A+ YIk Lq Thhalv10025811m 198 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIGYIKFLQ 236 677888999*******998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.452 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-10 | 196 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.61E-5 | 196 | 240 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.4E-8 | 200 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTEEFETAGV CTETSWNSAN SMFLAGFSLP RSTEIAIDTG SFEWQNIDTI DVKTYNESYH 60 NTSTFLSDTN FDSNSRIYVS SQFNLHEEEK FNPVNSCLKG LFDYSEQLLV PNCAKPDLFE 120 SFHLFDDVFL NESRTVSVFD HEIREKAEEE IQAWQSLITC KGASEKTEEL KDTELSPAPP 180 LKRQRLETPS QFPSFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHDAIG YIKFLQEQIS 240 VSISNPHLNS KGSGEQKQCS DESKNNTFDE DFRPRQDLRS LGLCLVPISS TFSTSPRHFD 300 ASNIWN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10025811m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413790.1 | 0.0 | transcription factor bHLH103 | ||||
Swissprot | Q8VZ22 | 1e-150 | BH103_ARATH; Transcription factor bHLH103 | ||||
TrEMBL | V4MQ75 | 0.0 | V4MQ75_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413790.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14712 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21340.1 | 1e-152 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10025811m |
Entrez Gene | 18029589 |
Publications ? help Back to Top | |||
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