PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GATA

Protein Properties

Length: 310aa MW: 33599.2 Da PI: 6.641

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025795m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.7	4.3e-15	215	251	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl++ +g+ Thhalv10025795m 215 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWTNRGT 251 ****999**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.236	79	114	IPR010399	Tify domain
SMART	SM00979	1.2E-13	79	114	IPR010399	Tify domain
Pfam	PF06200	3.1E-12	81	113	IPR010399	Tify domain
Pfam	PF06203	3.8E-14	147	189	IPR010402	CCT domain
PROSITE profile	PS51017	11.905	147	189	IPR010402	CCT domain
SuperFamily	SSF57716	1.38E-12	208	264	No hit	No description
PROSITE profile	PS50114	11.49	209	268	IPR000679	Zinc finger, GATA-type
SMART	SM00401	7.1E-16	209	262	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.9E-15	213	256	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	9.72E-16	214	264	No hit	No description
Pfam	PF00320	1.8E-12	215	251	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	215	242	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MFSRHSQPEI IPNQIGSSSA PAAEDHVSAS ATSGHIPYDD MDEIPHPNSV YAASDLLPDG 60 SQLVPHHRSE GSELLGCRPP ERANQLTISF RGQVYVFDAV GPDKVDAVLS LLGASTELSS 120 GQQVMEVAQQ NHLPAVEYQN RCSHPQRAQS LDRFRKKRNA RCFEKKVRYG VRQEVALRMA 180 RNKGQFTSAK MTDGAYNSGT DQDSAQEESH PEISCTHCGI SSKCTPMMRR GPSGPRTLCN 240 ACGLFWTNRG TLRDLSKKTE ENQMLITKPG EGGNDADANN SKSEPATVEE HTALVSLANG 300 DGSNLLGNH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025795m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086038	0.0	AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006413426.1	0.0	GATA transcription factor 25
Refseq	XP_006413427.1	0.0	GATA transcription factor 25
Swissprot	Q9LRH6	0.0	GAT25_ARATH; GATA transcription factor 25
TrEMBL	V4MEH6	0.0	V4MEH6_EUTSA; Uncharacterized protein
STRING	XP_006413426.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	0.0	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Thhalv10025795m
Entrez Gene	18030721

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]