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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10025785m |
| Common Name | EUTSA_v10025785mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
WRKY |
| Protein Properties |
Length: 312aa MW: 34926.9 Da PI: 7.1884 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10025785m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 94.8 | 5.9e-30 | 177 | 235 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58
++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
Thhalv10025785m 177 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 235
58***************************99**************************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0002237 | Biological Process | response to molecule of bacterial origin |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0010200 | Biological Process | response to chitin |
| GO:0042742 | Biological Process | defense response to bacterium |
| GO:0050691 | Biological Process | regulation of defense response to virus by host |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042802 | Molecular Function | identical protein binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MAYSSFLDIS LDLNTNPFDR NFPENFPKKE VNVSTSADLE RKCLVKEESA NELREELNRV 60
NSENKKLTEM LATVWENYYA LHHHLEKLQS RNSPEIDEQP TKKRKQDPDD FLLGFPVGLS 120
SGKTDNSSSN EDHHHHHQHE QKNQLLPCKR PVTDSFNKAK VSTVYVPADS TDTSLTVKDG 180
YQWRKYGQKV TRDNPSPRAY FRCSFAPSCP VKKKVQRSAE DPSLLVATYE GTHNHLGPNA 240
SEGDATSQVG TSTVTLDLVH GGHRLALEKN ERGTMQDVLV QQMASSLTKD SKFTAALAAA 300
ISGRLMEQAR T*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1wj2_A | 1e-19 | 179 | 235 | 19 | 74 | Probable WRKY transcription factor 4 |
| 2ayd_A | 1e-19 | 177 | 238 | 14 | 74 | WRKY transcription factor 1 |
| 2lex_A | 1e-19 | 179 | 235 | 19 | 74 | Probable WRKY transcription factor 4 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
| Publications
? help Back to Top |
- Keates SE,Kostman TA,Anderson JD,Bailey BA
Altered gene expression in three plant species in response to treatment with Nep1, a fungal protein that causes necrosis.
Plant Physiol., 2003. 132(3): p. 1610-22
[PMID:12857840] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Bülow L,Steffens NO,Galuschka C,Schindler M,Hehl R
AthaMap: from in silico data to real transcription factor binding sites.
In Silico Biol. (Gedrukt), 2006. 6(3): p. 243-52
[PMID:16922688] - Deeken R, et al.
Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
Plant J., 2008. 55(5): p. 746-59
[PMID:18485061] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang Y, et al.
Regulation of oncogene expression in T-DNA-transformed host plant cells.
PLoS Pathog., 2015. 11(1): p. e1004620
[PMID:25615824] - Geilen K,Böhmer M
Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
Sci Rep, 2015. 5: p. 13369
[PMID:26293691] - Geilen K,Böhmer M
Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
Plant Signal Behav, 2015. 10(11): p. e1106659
[PMID:26479147] - Lu K, et al.
Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
J. Exp. Bot., 2016. 67(17): p. 5009-27
[PMID:27406784] - Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
Plant Cell, 2017. 29(1): p. 20-38
[PMID:28011690]
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