PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 317aa MW: 35608.8 Da PI: 5.5008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025763m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	149	196	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Thhalv10025763m 149 SHSIAERARREKISERMKLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 196 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.65E-9	143	200	No hit	No description
SuperFamily	SSF47459	2.49E-16	143	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.732	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-17	145	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-8	149	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-10	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDKETEETLN CLLPLGRFCD TQEITPLSLS HFSEDFPIRF PYPAQFGSNQ VLGSQPTTQE 60 SNKSSLLDPD SVSDQDKTRH NSRKRKSIPT GNEKESPASS SLTASNSKIS EEKACKRSKQ 120 NETEKSENKE EPRKDYIHVR ARRGQATDSH SIAERARREK ISERMKLLQD LVPGCNRITG 180 KAVMLDEIIN YVQSLQTQVE FLSMKLATIN PITEFNANAL LSAELGESLT QAISCSEARL 240 PSEYLSLGKN IPRFFETQTQ FLNSSSASNG GFVHAEAPVF WENDLQSIVQ MGFRDIQQEN 300 TNCFEPTIHM KLEPER*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	SRKRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025763m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414789.1	0.0	transcription factor bHLH77 isoform X2
Swissprot	Q9LK48	1e-141	BH077_ARATH; Transcription factor bHLH77
TrEMBL	V4ML40	0.0	V4ML40_EUTSA; Uncharacterized protein
STRING	XP_006414788.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-131	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10025763m
Entrez Gene	18029742

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]