PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025757m
Common NameEUTSA_v10025757mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 318aa    MW: 34878.5 Da    PI: 4.7156
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025757mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17209243135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Thhalv10025757m 209 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 243
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-1031299IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.255203239IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-17203253IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-15205267No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14205241IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-14208255No hitNo description
PfamPF003202.7E-15209243IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEQLTPELFL VAGNADSFVV DDLLDFSNDD GQADDGLDTF PDSSTVSAGT LADSSNSSSL  60
YTDGTGFSDD LCVPCEHLAE LEWLSNFVEE ESFSKEDQDK LQLLSGLKNP QTTGSTQTHQ  120
IKPEPELDSL DSFIIATDTD TDDSNAASVP AKARSKRSRS AASTWASRLL AIAGSDESNP  180
KKKQLRIKEQ DLAGDFDGEG GESGGGRRCL HCATEKTPQW RTGPMGPKTL CNACGVRYKS  240
GRLVPEYRPA SSPTFVMARH SNSHRKVMEL RRQKEMRDEH LLTQLRSENL LMDIRSNGDD  300
FLIHNNNHVA PVFRHLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025757m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412416.10.0GATA transcription factor 9
SwissprotO826320.0GATA9_ARATH; GATA transcription factor 9
TrEMBLV4MBT30.0V4MBT3_EUTSA; GATA transcription factor
STRINGXP_006412416.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-156GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]