PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10025750m

Common Name

EUTSA_v10025750mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 320aa MW: 35981.3 Da PI: 5.5008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025750m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	149	196	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Thhalv10025750m 149 SHSIAERARREKISERMKLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 196 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.79E-9	143	200	No hit	No description
SuperFamily	SSF47459	2.49E-16	143	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-17	145	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.732	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-8	149	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-10	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDKETEETLN CLLPLGRFCD TQEITPLSLS HFSEDFPIRF PYPAQFGSNQ VLGSQPTTQE 60 SNKSSLLDPD SVSDQDKTRH NSRKRKSIPT GNEKESPASS SLTASNSKIS EEKACKRSKQ 120 NETEKSENKE EPRKDYIHVR ARRGQATDSH SIAERARREK ISERMKLLQD LVPGCNRITG 180 KAVMLDEIIN YVQSLQTQVE FLSMKLATIN PITEFNANAL LSAEMLQLGE SLTQAISCSE 240 ARLPSEYLSL GKNIPRFFET QTQFLNSSSA SNGGFVHAEA PVFWENDLQS IVQMGFRDIQ 300 QENTNCFEPT IHMKLEPER*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	SRKRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025750m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414788.1	0.0	transcription factor bHLH77 isoform X1
Swissprot	Q9LK48	1e-144	BH077_ARATH; Transcription factor bHLH77
TrEMBL	V4P9A4	0.0	V4P9A4_EUTSA; Uncharacterized protein
STRING	XP_006414788.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-135	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10025750m
Entrez Gene	18029742

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]