PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025656m
Common NameEUTSA_v10025656mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 338aa    MW: 35716.7 Da    PI: 6.6288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025656mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11155200555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Thhalv10025656m 155 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 200
                      99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-17148209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-13148204No hitNo description
PROSITE profilePS5088817.301150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9155200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNSSILTTPS SSSSSPHLQS PATFDHDDFL HHIFSSAPWS SSVLDDAPPS DSPVAGFHHH  60
DVVDSGNQIT MIPLSHHNPN DAVDGSSSVH ALFNGFSAGS LPFHFPQGSG EKMMNQTQTQ  120
TQSQATASTT TGGTTAPPQN KPKVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNG  180
NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAASVSSQ ISEDAGGSHE NNSSTTTENQ  240
TTAKMTEQQV AKLMEEDMGS AMQYLQGKGL CLMPISLATT ISTATCPSRN PLISAVKDAG  300
VPLSPNISAH STNTATTTIV NGSSLVTVKD APSVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025656m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937110.0AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412645.10.0transcription factor bHLH69
SwissprotQ8S3D51e-171BH069_ARATH; Transcription factor bHLH69
TrEMBLV4MMQ90.0V4MMQ9_EUTSA; Uncharacterized protein
STRINGXP_006412645.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-141LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]