PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025432m
Common NameEUTSA_v10025432mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 387aa    MW: 41945.6 Da    PI: 6.4393
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025432mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13134179247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  Thhalv10025432m 134 NPWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKY 179
                      69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.104.8E-54061IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.8784360IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.773128184IPR017930Myb domain
SuperFamilySSF466893.59E-17130185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-18131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-11132178IPR009057Homeodomain-like
SMARTSM007173.8E-11132182IPR001005SANT/Myb domain
PfamPF002495.0E-11134179IPR001005SANT/Myb domain
CDDcd001673.04E-9135180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MKNLPATHSV LPRLPSIRST AEDPNRARPD PIRITKSLSD MTRRCSHCNQ NGHNSRTCPN  60
RGVKLFGVRL TEGSIRKSAS MGNLSHCSGS GLSGLGGIGS DSPGDGPDHG VGDGYASEDF  120
VPGSSSSRER KKGNPWTEEE HRMFLLGLQK LGKGDWRGIS RNYVTTRTPT QVASHAQKYF  180
IRQSNVSRRK RRSSLFDMIP DEVTEVLMDS QELGAEDIPV ETQMQDTESV PAPLILETEE  240
CESMNSTNSS GEEPPTLTVS ASFRPEDTIQ TQLQPTGSFP VLYPTYFSPF YPFPFPVWSA  300
AYVTEPTKEE THEILRPTAV HSKAAPINVD QLLGMSQLSL GESSQNGVSE QSVSLNLAGG  360
SSSRQSAFHP NPASGGSDMN TVIHAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025432m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367861e-115AC236786.1 Brassica napus clone JBnB074N14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004350.10.0transcription factor KUA1
SwissprotQ9LVS01e-175KUA1_ARATH; Transcription factor KUA1
TrEMBLV4MR840.0V4MR84_EUTSA; Uncharacterized protein
STRINGXP_006414230.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34262759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-148MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]