PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025350m
Common NameEUTSA_v10025350mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 407aa    MW: 45287.3 Da    PI: 5.4333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025350mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-142572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede l+ +v+++G g+W+++ ++  + R++k+c++rw ++l
  Thhalv10025350m 25 KGPWTAAEDETLAAYVREYGEGNWNAVQKKTWLARCGKSCRLRWANHL 72
                     79******************************************9986 PP
2Myb_DNA-binding48.71.8e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E+ l+++++ qlG++ W++ a+ ++ gRt++++k++w++
  Thhalv10025350m  78 KGSFTADEERLIIQLHSQLGNK-WARMAAQLP-GRTDNEIKNFWNT 121
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.4772072IPR017930Myb domain
SMARTSM007171.1E-102474IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-2824119IPR009057Homeodomain-like
PfamPF002495.0E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-222679IPR009057Homeodomain-like
CDDcd001672.41E-102772No hitNo description
PROSITE profilePS5129424.40673127IPR017930Myb domain
SMARTSM007173.9E-1577125IPR001005SANT/Myb domain
PfamPF002493.9E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2480125IPR009057Homeodomain-like
CDDcd001674.10E-1180123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MILYGGGAPN DGVPDGGEGG VVLKKGPWTA AEDETLAAYV REYGEGNWNA VQKKTWLARC  60
GKSCRLRWAN HLRPNLRKGS FTADEERLII QLHSQLGNKW ARMAAQLPGR TDNEIKNFWN  120
TRLKRFQRQG LPLYPPDITQ NYHHQQPYTP SSDLPVFAFP QPPPPLLQPP TLRPKRCYET  180
AFSCLSTKPS YASSPTNFLV SSPTFLHTNS YPPSSYQCTN PVYSVKPELP SNQIPYSASL  240
GVSQVSNFSD NGNHNLDSGL QISTCQLLED LMEEAEALAD SYRAPKRRHL EATPEDNDTN  300
NNFFSGSFRH CGSSNSQCSL QGLKPKEEDS LQMNTMQDED IAKLLDWGSE SGEISNGQSS  360
VITTEENLVL DSHQFALLFP ADEDNNNNTN KNPRVSCSWD NLPEIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121251106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287RAPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025350m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413125.10.0transcription factor MYB97
SwissprotQ9S7730.0MYB97_ARATH; Transcription factor MYB97
TrEMBLV4MNQ30.0V4MNQ3_EUTSA; Uncharacterized protein
STRINGXP_006413125.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.10.0myb domain protein 97
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]