 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10025126m |
| Common Name | EUTSA_v10025126mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
WRKY |
| Protein Properties |
Length: 467aa MW: 51105.9 Da PI: 6.217 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10025126m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 81.2 | 1.1e-25 | 170 | 226 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+++g H he
Thhalv10025126m 170 PDGYNWRKYGQKQVKSPKGSRSYYRCTYSDCCAKK-IECSNDSGNVIEIVNKGLHSHE 226
5********************************98.*********************8 PP
|
| 2 | WRKY | 95.1 | 5.1e-30 | 332 | 388 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
Dgy+WrKYGqK+vkg+ +pr+YYrCtsagCpv+k++e++ e++++v+itY++ Hnh+
Thhalv10025126m 332 DGYRWRKYGQKMVKGNSNPRNYYRCTSAGCPVRKHIETAVENKTAVIITYKEVHNHD 388
9*******************************************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MEEKGSEAEV YAVETDKSEK VEPEKELCND GLSQLRDEES FGVTDADKED LHDESVRDTL 60
AKDQVEGARE NSAVEPNGED VKEAKEKDSG KENVVSAIMP VDKVSAENRE VETSPGLAVS 120
PDPSMVDPSS AQGDAQGLSL VSVPTKQEQK PDSCVVNNLL VSPVLRTPAP DGYNWRKYGQ 180
KQVKSPKGSR SYYRCTYSDC CAKKIECSND SGNVIEIVNK GLHSHEPPRK SSFSLREIRA 240
ASAITPVSED NKVVRETASV PSGSDPSVSS KENICQTIIE RKRHFENEAV EEPEPKRRLK 300
KDNSQSSDFV SKPGKKHKVV VHAAGDVGIS GDGYRWRKYG QKMVKGNSNP RNYYRCTSAG 360
CPVRKHIETA VENKTAVIIT YKEVHNHDMP VPKKRHGPPS SMLVAAAAPT SMRTRSDDQV 420
NIPTSSQCSV GRENEKQSSE ALDVGGEKVM ESARTLLSIG FEIKQC*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353411 | 0.0 | AK353411.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-K05. |
