PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024662m
Common NameEUTSA_v10024554mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARF
Protein Properties Length: 638aa    MW: 71868.1 Da    PI: 6.6813
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024662mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.12e-24119220199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + 
  Thhalv10024662m 119 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 208
                      88****************************9643..445569************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  Thhalv10024662m 209 ENGELRVGVRRA 220
                      9999******97 PP
2Auxin_resp109.24.5e-36245324183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a ha++t+++F+v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+eds+er++sGtvvg +d++p +W++SkWr+L+
  Thhalv10024662m 245 ACHATQTRTMFTVYYKPRT--SQFIISLNKYLEAMTNKFSVGMRFKMRFEGEDSPERSFSGTVVGGKDCSP-HWKDSKWRCLE 324
                      6899**************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-38110248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-42112234IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-21117219No hitNo description
PfamPF023623.6E-22119220IPR003340B3 DNA binding domain
SMARTSM010194.6E-24119221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731119221IPR003340B3 DNA binding domain
PfamPF065074.9E-32245323IPR010525Auxin response factor
PfamPF023092.3E-13506614IPR033389AUX/IAA domain
SuperFamilySSF542771.7E-12521602No hitNo description
PROSITE profilePS5174526.211526626IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MANRGGDGGG EHLYDELWKL CAGPLVNVPQ AEERVYYFPQ GHMEQLEAST QQDLNTMKPL  60
FNLPPKILCR VMNVRLQAEK DTDEVYAQIT LIPEGTQVDE PMSPDPSPPE TQRPKVHSFS  120
KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELV AEDVHGYQWK FKHIFRGQPR  180
RHLLTTGWST FVTSKRLVAG DTFVFLRGEN GELRVGVRRA NRQQSSMPSS VISSHSMHLG  240
VLATACHATQ TRTMFTVYYK PRTSQFIISL NKYLEAMTNK FSVGMRFKMR FEGEDSPERS  300
FSGTVVGGKD CSPHWKDSKW RCLEVHWDEP ASISRPDKVS PWEIEPFVTS ENVPQSVVLK  360
NKRPRQVSEV SALDVGITAS NLWSSALTQS HEFAQSCITS QRNSPKQYYR DAIEDAKNPD  420
WPISPYSVSN VSKDSTLNDQ MVFPVKQKKP ETTASYRLFG IDLMSSSIAA SEEKTAAMRP  480
INITKPTPES NSDPKSEISK VSEEKKQEPA QASPKEVQSK QSSSTRSRTK VQMQGVPVGR  540
AVDLTVLSGY SELIDDLEKL FDIKDELRSR SQWEIVFTDD EGDMMLVGDD PWPEFCNMVK  600
RIFIWSKEEV KKMTPGNQLR MLLTEVETAS KTDNHSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16653479355Auxin response factor 1
4ldw_A1e-16653479355Auxin response factor 1
4ldw_B1e-16653479355Auxin response factor 1
4ldx_A1e-16653479355Auxin response factor 1
4ldx_B1e-16653479355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024662m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0821760.0AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413488.10.0auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV4P5Z30.0V4P5Z3_EUTSA; Auxin response factor
STRINGXP_006413489.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9