PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024509m
Common NameEUTSA_v10024509mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 740aa    MW: 81441.5 Da    PI: 6.8679
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024509mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-095185551954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Thhalv10024509m 518 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 555
                      664459******************************88 PP
2BELL122.32e-39376447172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  Thhalv10024509m 376 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 447
                      589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-76309445IPR006563POX domain
PfamPF075262.7E-49314444IPR006563POX domain
PROSITE profilePS5007112.568496559IPR001356Homeobox domain
CDDcd000864.93E-12499560No hitNo description
SMARTSM003891.2E-9499563IPR001356Homeobox domain
SuperFamilySSF466893.26E-17501566IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-29502565IPR009057Homeodomain-like
PfamPF059203.7E-18516555IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MGIAKTSPTC TILLKTLCDN SMSQDYHHHH PHQPHQGGIF SFSNGFDRSD SPNLTQQKQE  60
HQRVEMDEES SVAGSGIPVY ETAGMLSEMF NFPGSSGGGG GDLDHGQSFR SNRQLLEQQH  120
QNIPAMNATD SAAAMQLFLM NPPPPQQPPS PASTTTTRSH HSSSTLHMLL PNPSHHHQGY  180
ANTMSMHQLP HQHHHQQHLT WQSSSSSSDH HHHHHHHHNS QREIGTVHVE NSGGQGLSLS  240
LSSSLEAAAK AEEYRRNIYY GSNSSKASSH HHQYNQFKTL LADSSQHHQV LNQFRSSPAA  300
AAATSTSSTG AVNILRNSRY TMAAQELLEE FCSVGRGFSK KSKLRNSSNP NTSGGAGGSP  360
SSAGAIKDHS PLSASDRIEH QRRKVKLLTM LEEVDRRYNH YCEQMQMVVN SFDIVMGHGA  420
ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ  480
SLRQQRAFHQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL  540
SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEEELE ENEEDQETKN SNNDKSTKSN  600
NNESNFSAVR TTSQTPMTTA QSEATAPDAD ADAAIATGHR LRSSDINAYE NDPSSLLLPS  660
SSYSDAAAVS SYGGSASFSA VATCQQGVGG FDDTDIDGVN VIRFGTNPTG DVSLTLGLRH  720
AGNMPDKDPS FCVRDFGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16505563563Homeobox protein Meis2
3k2a_B1e-16505563563Homeobox protein Meis2
4xrs_A1e-16505562158Homeobox protein Meis1
4xrs_B1e-16505562158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024509m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411954.10.0BEL1-like homeodomain protein 2
RefseqXP_024005715.10.0BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLV4MDV40.0V4MDV4_EUTSA; Uncharacterized protein
STRINGXP_006411954.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]