PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 790aa MW: 90493.4 Da PI: 6.2687

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10024456m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.5	3.6e-31	82	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ +++eHnH+l+p Thhalv10024456m 82 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKEHNHDLVP 173 9*************************************999888555667889********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-29	82	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-32	294	386	IPR018289	MULE transposase domain
Pfam	PF04434	8.9E-13	562	608	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.608	578	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MDNEVLDFDI GVGVSSGGDV DDDAIDIEHQ DGIDEDDMLD SPMPGFSVGN SDAGNYFPEG 60 DLLDLEPYDG LEFESEEAAK AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF 120 RNMNEKRTKD REIKRPRTIT RVGCKASLSV KMQDSGKWLV SGFVKEHNHD LVPPDQVHCL 180 RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQKST 240 EAEIQLLLDY LRQMSADNPN FYYAVQGSED QSVGNVFWAD PKARMDFAYF GDTVTFDTTY 300 RSNRYRLPFA PFTGVNHHGQ PILFGCAFII NETEASFVWL FNTWLTAMSS HPPVSITTDH 360 DAVIRAAIMQ VFPAARHRFC KWHIFKKCQE KLSHVFLRHP SFESDFHKCV NLTESVEDFE 420 SCWFSLLDKY ELRDHEWLQA IYSDRRQWIP VYLRDTFFAE MSSTQRSDTM NSYFDGYINA 480 STNLSQFFKL YEKALESRLE KEVKADYDTM NSPPVLKTPS PMEKQASELY TRKLFMRFQE 540 ELVGTLTFMA SKADDDGDLV TYQVAKYGED HKAHFVKFNV LEMRANCSCQ MFEFSGIICR 600 HILAVFRVTN LLTLPPYYIL KRWTRNAKSS VIFDDDGLHA YANYLESHTV RYNTLRHKAF 660 NFVEEAGKSL YTCEVAVVAL QEAAKTVSLA MKNEVTRIIA NGHVKESSVT GGKLMCCNED 720 CQHELPAQLE PEDEMDKKIN QLRNELELAK RKCEAYRTNL LSVLKEMEDQ KLQVSIKVQN 780 IKISLKDSL*

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MDNEVLDFDI GVGVSSGGDV DDDAIDIEHQ DGIDEDDMLD SPMPGFSVGN SDAGNYFPEG  60
DLLDLEPYDG LEFESEEAAK AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF  120
RNMNEKRTKD REIKRPRTIT RVGCKASLSV KMQDSGKWLV SGFVKEHNHD LVPPDQVHCL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQKST  240
EAEIQLLLDY LRQMSADNPN FYYAVQGSED QSVGNVFWAD PKARMDFAYF GDTVTFDTTY  300
RSNRYRLPFA PFTGVNHHGQ PILFGCAFII NETEASFVWL FNTWLTAMSS HPPVSITTDH  360
DAVIRAAIMQ VFPAARHRFC KWHIFKKCQE KLSHVFLRHP SFESDFHKCV NLTESVEDFE  420
SCWFSLLDKY ELRDHEWLQA IYSDRRQWIP VYLRDTFFAE MSSTQRSDTM NSYFDGYINA  480
STNLSQFFKL YEKALESRLE KEVKADYDTM NSPPVLKTPS PMEKQASELY TRKLFMRFQE  540
ELVGTLTFMA SKADDDGDLV TYQVAKYGED HKAHFVKFNV LEMRANCSCQ MFEFSGIICR  600
HILAVFRVTN LLTLPPYYIL KRWTRNAKSS VIFDDDGLHA YANYLESHTV RYNTLRHKAF  660
NFVEEAGKSL YTCEVAVVAL QEAAKTVSLA MKNEVTRIIA NGHVKESSVT GGKLMCCNED  720
CQHELPAQLE PEDEMDKKIN QLRNELELAK RKCEAYRTNL LSVLKEMEDQ KLQVSIKVQN  780
IKISLKDSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10024456m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411599.2	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4MD13	0.0	V4MD13_EUTSA; Uncharacterized protein
STRING	XP_006411599.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Thhalv10024456m
Entrez Gene	18028119

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]