PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10024128m | ||||||||
Common Name | EUTSA_v10024128mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 16673.4 Da PI: 9.5465 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.7 | 1.3e-11 | 18 | 109 | 34 | 128 |
NAM 34 ikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhe 125 ++ +y+++Pw +++++ ++ F+k+++ +a+ r+ +g W+ g+dk ++s+ +g+ g k++L f +++ +++ k Wvm+e Thhalv10024128m 18 WPHEYVYNLNPWITF---NNTTNpKYMVFVKSRT-EAS-GRTDDGCGAGCWRIIGRDKLIKSEeTGKILGFKRILKFCDKEMNRSDKRIWVMEE 106 566678999999764...2333415555655544.444.577777899*************98778889************************* PP NAM 126 yrl 128 +rl Thhalv10024128m 107 FRL 109 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.698 | 1 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-6 | 10 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-16 | 13 | 116 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MGDHPVLNHL NMMIDDSWPH EYVYNLNPWI TFNNTTNPKY MVFVKSRTEA SGRTDDGCGA 60 GCWRIIGRDK LIKSEETGKI LGFKRILKFC DKEMNRSDKR IWVMEEFRLF DKRKQDQVIG 120 LIQLLLPPAV SALLAKHFSF LPK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10024128m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392171.1 | 1e-105 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | V4KHX0 | 1e-103 | V4KHX0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392171.1 | 1e-104 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60280.1 | 8e-34 | NAC domain containing protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10024128m |
Entrez Gene | 18009558 |