PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10024079m
Common NameEUTSA_v10024079mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 688aa    MW: 71347.7 Da    PI: 10.5381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10024079mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.1e-10194238144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      r++W++eEde lv avk++G g+W++ a+ +     +t+ q+  rw
  Thhalv10024079m 194 RKKWSAEEDENLVTAVKRHGEGSWALMAK-VEfdGEKTPSQLSQRW 238
                      789***********************665.4446667777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-12189242IPR009057Homeodomain-like
PROSITE profilePS5129412.231189246IPR017930Myb domain
SuperFamilySSF466895.46E-11191244IPR009057Homeodomain-like
SMARTSM007173.2E-9193244IPR001005SANT/Myb domain
PfamPF002498.2E-8194238IPR001005SANT/Myb domain
CDDcd116606.75E-11195238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MVDSSNNKRK EFISEGDIAT LLQRYDTATI LKLLQEMAYH AKPNMDWNEL VKKTNTGITN  60
AREYQLLWRH LAYRDSLLPK ENNAQLQDDD SDMECELEAS PEVSVDAVAE AVAHVKVIAA  120
SYVPSESDIP EDSMVEAPLT INIPYGLHKG PQEPSDSYWS SRGMNITFPV SLQKAAEGHN  180
GNGLASSMAT RKRRKKWSAE EDENLVTAVK RHGEGSWALM AKVEFDGEKT PSQLSQRWGA  240
IRKRCDTSNS SSQSGLQRTE EQMAANRALS LAVGNRVPSK KLGVGVPPMV SPGSISGAQA  300
NGANTGSSLQ ARQQSQPVVQ ALPRAATSIP TSKSRVTAKK TTANSTSRAE LMVTANSVAA  360
AACMSGLATA ASVPKVEPGK NAVPVLVPKV EPVKTASTAS LPRTSSVMNA EPVKTASTSA  420
ASMPRPSGVS SSLNAGPGRT ASAASVPRPS GVSSSLNAGP GKTASAASVP RPSGTSTEPG  480
KTVLAPSFPR PSGVISASKP EPVKAAPAAS LPRLSGVIPA PKAEPVKTAL APSLPPPSGV  540
ISEPKAEPVK TPLAPSLPRT SGIISAPKAE PVKTAPAFSS PRPSNISPAP KAEPAKSVAA  600
ATNTQVSGPL NIRNAVNGSP KNLISSSPSN KPFSPMAPFS KGPTIQNTSV PSSFASSRLA  660
PTQRVVPAAT VTTQKLSAGT AVTASSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10024079m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392319.20.0nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBLV4JW050.0V4JW05_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006392319.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein