PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023876m
Common NameEUTSA_v10023876mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 177aa    MW: 20659.7 Da    PI: 4.9351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023876mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.62.2e-14161386128
              NAM   6 rFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                      r +P de ++++yL+  ++++k    +++++v  ++y+++Pw     ++ ++ + + F+k+++ +a   r+     sg W+  g dk ++s+ +
  Thhalv10023876m  16 RIEPADEVIISYYLNMMINNSKSWPYHFLRDVdaEVYNLNPWIS---FNIQNPNFFMFVKSRT-EAC-GRTDG-CGSGCWRIIGCDKLIKSEeT 103
                      678***************999955557788884459******65...3344455555555544.444.46665.479*************9877 PP

              NAM  97 gelvglkktLvfy...kgrapkgektdWvmheyrl 128
                      g+  g k++L f     +r+++  +  Wvm+eyrl
  Thhalv10023876m 104 GKILGFKRILKFCekwINRSEQEDQRIWVMEEYRL 138
                      8889*********44436888889999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.57511154IPR003441NAC domain
PfamPF023658.6E-1116138IPR003441NAC domain
SuperFamilySSF1019412.35E-2218152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEEDDAVLSE DDYDERIEPA DEVIISYYLN MMINNSKSWP YHFLRDVDAE VYNLNPWISF  60
NIQNPNFFMF VKSRTEACGR TDGCGSGCWR IIGCDKLIKS EETGKILGFK RILKFCEKWI  120
NRSEQEDQRI WVMEEYRLVD KRKQDQVVCK IQLLLPPAVS ALQAKHFSFL PKSMLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023876m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392200.11e-130NAC domain-containing protein 40
TrEMBLV4ME311e-129V4ME31_EUTSA; Uncharacterized protein
STRINGXP_006392200.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60340.16e-54NAC family protein