PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023865m
Common NameEUTSA_v10023865mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 181aa    MW: 20534.2 Da    PI: 5.4351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023865mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-163079255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++    +Wv+e+r+p        +r++lg++ tae+Aa+a++ a ++l+g
  Thhalv10023865m 30 IYRGVRRRN-GDKWVCEVREP-----IhqRRIWLGTYPTAEMAARAHDVAVLALRG 79
                     69****877.9******9997.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-112979IPR001471AP2/ERF domain
CDDcd000185.66E-262989No hitNo description
Gene3DG3DSA:3.30.730.108.1E-293089IPR001471AP2/ERF domain
SMARTSM003809.1E-253093IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-203089IPR016177DNA-binding domain
PROSITE profilePS5103221.9043087IPR001471AP2/ERF domain
PRINTSPR003677.4E-83142IPR001471AP2/ERF domain
PRINTSPR003677.4E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MENDDISLAE MRPKKKRAGR RIFKETRHPI YRGVRRRNGD KWVCEVREPI HQRRIWLGTY  60
PTAEMAARAH DVAVLALRGR TACLNFSDSA WRLPAPESID PDTIRRTAAE AAEIFRPPEF  120
GDEITVFPSS GGGELATSEE GEGFAGMMMR LAEEPLMSPP RSYIDMNTSV YVEEERCYEE  180
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00104PBMTransfer from AT1G63030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023865m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5207330.0EF520733.1 Thellungiella halophila putative C-repeat binding factor (DREB1E) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391789.11e-130dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ61e-106DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLB2BI351e-129B2BI35_EUTHA; Putative C-repeat binding factor
TrEMBLV4JUP41e-129V4JUP4_EUTSA; Uncharacterized protein
STRINGXP_006391789.11e-130(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-109ERF family protein