PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023723m
Common NameEUTSA_v10023723mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 172aa    MW: 20665 Da    PI: 9.3353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023723mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.58.6e-1351378128
              NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                       P ++++v +yLk  +++ +   ++++++ d+y v+Pw+  +  +    ++  y F++r +++    ++    +sg W+  g+dk ++s+ +ge
  Thhalv10023723m   5 YPPEDQIVAYYLKMITDKGNDWSSNFLESKDVYCVNPWTHFNtrEPLVLHDGRYLFVNRTENSG---KTD-GCESGCWRIMGRDKLIKSEkNGE 94 
                      588899******999998887776889999********974212222245688****9988653...333.4589*************987888 PP

              NAM  99 lvglkktLvfy.............kgrapkgektdWvmheyrl 128
                        g kk++ f              k++++   k  Wvm+ey l
  Thhalv10023723m  95 ILGFKKVFKFCekeepksifrcweKEKRRVRDKRIWVMQEYML 137
                      9**********666666655555434444446999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.7291153IPR003441NAC domain
SuperFamilySSF1019411.31E-255151IPR003441NAC domain
PfamPF023651.2E-95136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTMIYPPEDQ IVAYYLKMIT DKGNDWSSNF LESKDVYCVN PWTHFNTREP LVLHDGRYLF  60
VNRTENSGKT DGCESGCWRI MGRDKLIKSE KNGEILGFKK VFKFCEKEEP KSIFRCWEKE  120
KRRVRDKRIW VMQEYMLASK WKRDYVICKI RLLNPHPLEF MLSNHIRGYY I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023723m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017511e-31HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392175.11e-126protein CUP-SHAPED COTYLEDON 1
TrEMBLV4MDY91e-125V4MDY9_EUTSA; Uncharacterized protein
STRINGXP_006392175.11e-125(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.15e-69NAC family protein