PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023630m
Common NameEUTSA_v10023630mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 288aa    MW: 32104.8 Da    PI: 8.627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023630mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09755254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +  +  rE+ RR+++N+ f eL  +l ++     +K++Ka+iL+ +v+ +k+L
  Thhalv10023630m  7 KSQKAGREKLRREKLNEHFLELGNVLDPD----RPKNDKATILTDTVQLLKEL 55
                     5566779******************9997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.268555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-13571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-6659No hitNo description
PfamPF000109.1E-7755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-71161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDVSARKSQK AGREKLRREK LNEHFLELGN VLDPDRPKND KATILTDTVQ LLKELTSEVN  60
KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMSP WGAAMDHTVM  120
MAPPPSFPYP MPMAMPPGSI PMHPSMPSYP YFGNQNPSMM PAPCTTYMPY MPPNTIVEQQ  180
SVHIPQNPSN RSREPRTKAS RESRSEKAED SNDVATQLEL KTPGSTSDKD TSSQRPEKTK  240
RSKRNSSNNN NSIEESSHSS KCSSSPSVRD SSSSSSVAGG QKPDDAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023630m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529270.0AK352927.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-A12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391636.10.0transcription factor bHLH121
SwissprotQ9LT231e-168BH121_ARATH; Transcription factor bHLH121
TrEMBLV4KGG00.0V4KGG0_EUTSA; Uncharacterized protein
STRINGXP_006391636.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-150bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]