PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

TALE

Protein Properties

Length: 295aa MW: 33122.4 Da PI: 6.565

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10023617m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.7	1.7e-07	244	276	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+++++++L +++gL+ +q+ +WF N+R + Thhalv10023617m 244 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276 58*****************************87 PP
2	ELK	22.7	2.3e-08	197	218	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Thhalv10023617m 197 ELKLELKQGFKSRIEDVREEIM 218 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	6.4E-19	29	73	IPR005540	KNOX1
Pfam	PF03790	2.0E-16	31	72	IPR005540	KNOX1
SMART	SM01256	9.3E-25	83	138	IPR005541	KNOX2
Pfam	PF03791	1.1E-18	88	137	IPR005541	KNOX2
PROSITE profile	PS51213	9.202	197	217	IPR005539	ELK domain
PROSITE profile	PS50071	11.823	217	280	IPR001356	Homeobox domain
SMART	SM00389	6.3E-11	219	284	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-16	219	283	IPR009057	Homeodomain-like
CDD	cd00086	1.45E-11	220	281	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-25	224	282	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	237	276	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MQEAALGMIG ATVGGGGDGD AAVLAEQNRQ MKGEIATHPM YEQLLAAHVA CLRVATPIDQ 60 LPIIEAQLSH SHHLLRSYAS TAVGFSNHDR HELDNFLAQY IMVLCSFKEQ LQQHVRVHAV 120 EAVMACREIE NNLHSLTGAT LGEGSGATMS EDEDDLQMDF SSDNSGVDFT GGHDMTGFGP 180 LLPTESERSL MERVRQELKL ELKQGFKSRI EDVREEIMRK RRAGKLPGDT TTVLKNWWQQ 240 HCKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN NSHSLTSLKS KRKH*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in secondary cell wall biosynthesis. {ECO:0000269\|PubMed:15980264}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10023617m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	Z29073	0.0	Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391797.1	0.0	homeobox protein HD1
Swissprot	Q9FPQ8	0.0	KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBL	V4KP17	0.0	V4KP17_EUTSA; Uncharacterized protein
STRING	XP_006391797.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM444	28	158

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	0.0	KNOTTED-like homeobox of Arabidopsis thaliana 7

Link Out ? help Back to Top
Phytozome	Thhalv10023617m
Entrez Gene	18010048

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He JB, et al. KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis. J Integr Plant Biol, 2018. 60(6): p. 514-528 [PMID:29393579]