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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10023588m |
| Common Name | EUTSA_v10023588mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
ERF |
| Protein Properties |
Length: 329aa MW: 35960.5 Da PI: 6.9665 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10023588m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.9 | 6e-19 | 130 | 180 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge
Thhalv10023588m 130 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 180
59******9.**********954...5**************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MEESNDLFQT NFSPKISEIR ASLSQIILAG GPNTLDSIFS FLTPSSTTSL DTLNPPPPPS 60
PQLGSSVYLR QRDLIERLHL QNRAVSTPPL FSSSFDHQTS ELMLQEASAN PAAAFAAALA 120
AGRTAKKKKL YRGVRQRHWG KWVAEIRLPQ NRMRVWLGTY DTAEAAAYAY DRAAYKLRGE 180
YARLNFPNLK DPSELLGLGD SSKLIALKSA VDGKIQMICQ RVRRERAKKS GKRTATATDS 240
SHSSSPEILS SPAATVTATA VNSEDSYWNS PMGVWNSENS SPASVSISDE VPAMTTEEDT 300
MMGVDTDGFL LARMPSFDPE LIWEVLAN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC066689 | 0.0 | AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence. |
| GenBank | AK228763 | 0.0 | AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15. |
| GenBank | AY560876 | 0.0 | AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds. |
| GenBank | BT033082 | 0.0 | BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
