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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10023490m |
| Common Name | EUTSA_v10023487mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
bHLH |
| Protein Properties |
Length: 417aa MW: 45679.2 Da PI: 6.2492 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10023490m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 20.1 | 1.2e-06 | 304 | 342 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++++ + L++l+ + +K + a++L++A+eYIk L
Thhalv10023490m 304 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 342
5778999**********998.....8****************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042631 | Biological Process | cellular response to water deprivation |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0071215 | Biological Process | cellular response to abscisic acid stimulus |
| GO:0071472 | Biological Process | cellular response to salt stress |
| GO:2000214 | Biological Process | regulation of proline metabolic process |
| GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 417 aa
Download sequence Send
to blast |
MLFVSNTTHS YKLLTFALQL SDSVYMAEEF QATAAICGGG SGAWWNSPRS VMSPSDHFLS 60
PCFGAAITSN DFGSQENNLK SRMNCTDNNI VFGQREADSD SGGSTVTIDS TLQMMGLGFS 120
SNSSSDWNQT ILQEELNSSF IRSSQDQDHS QGFLSTTTSP YLLNPACSSS SSTSSSPSLL 180
RSFYDPESSP YNFVSTTSCS INDPQLSWTN NKTNPQHQPA YGLINNFPNN TNSRPFWSSS 240
STTNLNNTTQ NSFVTTPQMI STRLEDKTKK ARGQSESLKR AKDNESASKK PRVTTPSPLP 300
TFKVRKENLR DQITSLQQLV SPFGKTDTAS VLQEAIEYIK FLHDQVTVLS TPYMKQGASI 360
QQQQQISGKS KNQDGSDNQE LRAHGLCLVP ISSTFPVANE TTADFWTPTF GGNNFR*
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF380649 | 0.0 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Chen HC, et al.
The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
Plant Mol. Biol., 2017. 94(4-5): p. 531-548
[PMID:28631168]
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