PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023487m
Common NameEUTSA_v10023487mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 419aa    MW: 45921.5 Da    PI: 6.2492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023487mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.2e-063063441154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  Thhalv10023487m 306 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 344
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11305362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-6305348No hitNo description
Gene3DG3DSA:4.10.280.106.7E-9305357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLFVSNTTHS YKLLTFALQL SDSVYMAEEF QATAAICGGG SGAWWNSPRS VMSPSDHFLS  60
PCFGAAITSN DFGSQENNLK SRMNCTDNNI VFGQREADSD SGGSTVTIDS TLQMMGLGFS  120
SNSSSDWNQT ILQEELNSSF IRSSQDQDHS QGFLSTTTSP YLLNPACSSS SSTSSSPSLL  180
RSFYDPESSP YNFVSTTSCS INDPQLSWTN NKTNPQHQPA YGLINNFPNN TNSRPFWSSS  240
STTNLNNTTQ NSFVTTPQMI STRLEDKTKN QKARGQSESL KRAKDNESAS KKPRVTTPSP  300
LPTFKVRKEN LRDQITSLQQ LVSPFGKTDT ASVLQEAIEY IKFLHDQVTV LSTPYMKQGA  360
SIQQQQQISG KSKNQDGSDN QELRAHGLCL VPISSTFPVA NETTADFWTP TFGGNNFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023487m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806490.0AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391985.10.0transcription factor bHLH112 isoform X1
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLV4MDF70.0V4MDF7_EUTSA; Uncharacterized protein
STRINGXP_006391985.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]