PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023325m | ||||||||
Common Name | EUTSA_v10023326mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 668aa MW: 74307.4 Da PI: 6.2148 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.6e-22 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + Thhalv10023325m 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RG 217 99****************************964333..4459************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ Thhalv10023325m 218 ENEELRVGVRRH 229 88889****996 PP | |||||||
2 | Auxin_resp | 113 | 2.7e-37 | 254 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t+++F+v+Y+Pr+s+seF+v+v+++++a ++k+svGmRfkm+fe+e+++e+r+sGt+vgv++ +++ W++S+WrsLk Thhalv10023325m 254 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKNQKLSVGMRFKMKFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLK 336 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-44 | 117 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-40 | 125 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.44E-19 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 1.1E-19 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-34 | 254 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.8E-11 | 542 | 634 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 29.039 | 544 | 637 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.23E-11 | 546 | 621 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MDSQMAASNH SSGKPGGVLS DALYRELWHA CAGPLVTLPR EGERVYYFPE GHMEQLEASM 60 HQGLEQQMPS FNLPSKILCK VINIQRRAES ETDEVYAQIT LLPELDQSEP ISPDAPVQEP 120 EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHNNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENE ELRVGVRRHM RQQTNIPSSV 240 ISSHSMHIGV LATAAHAITT GTIFSVFYKP RTSRSEFIVS VNRYLEAKNQ KLSVGMRFKM 300 KFEGEEAPEK RFSGTIVGVQ ENKSSVWHDS EWRSLKVQWD EPSSVFRPER VSPWELEPLV 360 ANSTPSSHPQ PPPRNKRPRP PGLPSPTTGP PTPDGVWKSP ADTPSLVPLF SPPAKIATFG 420 HGGNKLHGGV SIGAAFWPSH AESATESFAS AFNNESTEKK QSNGNVCRLF GFELVENVNV 480 DECFSAASVS GAVAVDQPIP SNEFDSGQQP EPLNINQFDI PSGSGDAEKS SLRSPPESQS 540 RQIRSCTKVH MQGSAVGRAV DLTRSECYDD LFKKLEEMFD IKGELLESNK KWHVVYTDDE 600 DDMMMVGDDP WNEFCGMVRK IFIYTPEEVR KLSPKNKLTV NVRIQPKTDA EENENTEGRS 660 SSMAGSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 363 | 1 | 359 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 363 | 1 | 359 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 363 | 1 | 359 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 379 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10023325m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133723 | 0.0 | AY133723.1 Arabidopsis thaliana auxin response factor 1 (At1g59750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392242.1 | 0.0 | auxin response factor 1 | ||||
Refseq | XP_024005380.1 | 0.0 | auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | V4KQC1 | 0.0 | V4KQC1_EUTSA; Auxin response factor | ||||
STRING | XP_006392241.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8825 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023325m |
Entrez Gene | 18010272 |
Publications ? help Back to Top | |||
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