PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10023271m

Common Name

EUTSA_v10023271mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 843aa MW: 93747.3 Da PI: 6.4623

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10023271m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.5e-29	557	607	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Thhalv10023271m 557 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 607 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.439	544	627	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-26	559	607	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-20	730	828	No hit	No description
SMART	SM00666	2.5E-21	738	824	IPR000270	PB1 domain
PROSITE profile	PS51745	19.28	738	824	IPR000270	PB1 domain
CDD	cd06407	9.79E-33	739	823	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-24	739	824	No hit	No description
Pfam	PF00564	1.4E-17	739	823	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MELDDLDLGG SWPLDQITFS SNFRSPVIFS SFEQPFSPLW SFSEAAGDAG GELCSATAAP 60 TRFTDYSVLL ASSESETNKD KDNITAPSPL WRSIMPMENP DSYCAIKEKM TQALRYFKES 120 TGQQHVLAQV WAPVKNRGRY VLTTSGQPFV LGPNSNGLNQ YRMVSLTYMF SVDSERDGEL 180 GLPGRVFRKK LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR QLCVGVVELI 240 MTSPKINYAP EVEKVCKALE AVNLKTSEIL NHESTQICNE GRQNALAEIL EILTVVCETY 300 KLPLAQTWVP CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV DAHVWGFRDA 360 CAEHHLQKGQ GVAGRAFLAG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC FAVCLKSTYT 420 GDDEYVLEFF LPPAITDKGE QDCLLGSLFQ TMKQHYSSLK VVSGTELCEN EISIEVVEAS 480 EDGIVYSKLE PVQIHHPAPI SKDYLKLNAP EQKLGLINPD LMENNEVADE FERFQTLNPS 540 PEAKKGKKSE RKRGKTEKTI SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP 600 SRKINKVNRS LTRLKHVIDS VQGADGSINL TSLSSRPWPH QVSPIENQPP PPATRSPTSY 660 LQDVKLENRD AEDSAGSSTS RASCKVSPIC ETRFRLLTQN QEAFRQTALD DSDSTSKNIT 720 NFWTSQDTAS PTTLHNKLVS IKATYREDII RFKISTESVS ITELKQQVAK RLKLETAAFE 780 LKYLDDDSEW VSVSCDADLS ECLDTSSVAT TAKAKTLRLS VHDVIPNFGS SCESSEETMM 840 CL*

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MELDDLDLGG SWPLDQITFS SNFRSPVIFS SFEQPFSPLW SFSEAAGDAG GELCSATAAP  60
TRFTDYSVLL ASSESETNKD KDNITAPSPL WRSIMPMENP DSYCAIKEKM TQALRYFKES  120
TGQQHVLAQV WAPVKNRGRY VLTTSGQPFV LGPNSNGLNQ YRMVSLTYMF SVDSERDGEL  180
GLPGRVFRKK LPEWTPNVQY YSSKEFSRLG HALHYNVQGT LALPVFEPSR QLCVGVVELI  240
MTSPKINYAP EVEKVCKALE AVNLKTSEIL NHESTQICNE GRQNALAEIL EILTVVCETY  300
KLPLAQTWVP CRHRSVLAFG GGFKKSCSSF DGSCMGKVCM STSDLAVYVV DAHVWGFRDA  360
CAEHHLQKGQ GVAGRAFLAG NLCFSRDVTR FCKTDYPLVH YARMFKLTSC FAVCLKSTYT  420
GDDEYVLEFF LPPAITDKGE QDCLLGSLFQ TMKQHYSSLK VVSGTELCEN EISIEVVEAS  480
EDGIVYSKLE PVQIHHPAPI SKDYLKLNAP EQKLGLINPD LMENNEVADE FERFQTLNPS  540
PEAKKGKKSE RKRGKTEKTI SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP  600
SRKINKVNRS LTRLKHVIDS VQGADGSINL TSLSSRPWPH QVSPIENQPP PPATRSPTSY  660
LQDVKLENRD AEDSAGSSTS RASCKVSPIC ETRFRLLTQN QEAFRQTALD DSDSTSKNIT  720
NFWTSQDTAS PTTLHNKLVS IKATYREDII RFKISTESVS ITELKQQVAK RLKLETAAFE  780
LKYLDDDSEW VSVSCDADLS ECLDTSSVAT TAKAKTLRLS VHDVIPNFGS SCESSEETMM  840
CL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10023271m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391609.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	V4JU57	0.0	V4JU57_EUTSA; Uncharacterized protein
STRING	XP_006391609.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10023271m
Entrez Gene	18010140

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]