PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GATA

Protein Properties

Length: 203aa MW: 22389.3 Da PI: 8.2179

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10022854m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	61.9	7.6e-20	93	127	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C tt+TplWR+gp g+k+LCnaCG++++k+++ Thhalv10022854m 93 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 127 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.19E-13	87	127	No hit	No description
PROSITE profile	PS50114	13.468	87	123	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.2E-19	87	139	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.7E-17	91	127	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.76E-13	92	124	No hit	No description
PROSITE pattern	PS00344	0	93	118	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.7E-17	93	127	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MMGYQTNPNF SMFFSSENDD QNHQNYDPYN NLSSSTSVDC TLSLGTPSTR LDDHRRFSSA 60 SSNISGDFFF HGGNAKTTSY KKSNGDHNLP RRCASCDTTS TPLWRNGPKG PKSLCNACGI 120 RFKKEERRAS ARNSIISGGG SSAAEIPAEN LYRGGGNYYS HHHHYASSSP SWAHQNTQRV 180 PYFSPAPEME YDVTAASYLS WN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00110	ampDAP	Transfer from AT2G18380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10022854m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409160.1	1e-150	GATA transcription factor 20
Swissprot	Q9ZPX0	1e-114	GAT20_ARATH; GATA transcription factor 20
TrEMBL	V4MDP8	1e-149	V4MDP8_EUTSA; Uncharacterized protein
STRING	XP_006409160.1	1e-150	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6159	17	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18380.1	2e-98	GATA transcription factor 20

Link Out ? help Back to Top
Phytozome	Thhalv10022854m
Entrez Gene	18026374

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]