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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022806m | ||||||||
Common Name | EUTSA_v10022806mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 268aa MW: 30419.2 Da PI: 9.4171 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.9 | 9.2e-32 | 82 | 137 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eC++NhAas Ggh+vDGCgEfm+s geegta++l CaAC+CHR+FHR+e + Thhalv10022806m 82 KSVRYRECQRNHAASSGGHVVDGCGEFMSS-GEEGTAESLLCAACDCHRSFHRKEID 137 579**************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-34 | 70 | 146 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.9E-30 | 84 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-29 | 85 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.663 | 86 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.26E-18 | 196 | 263 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 197 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.0E-30 | 203 | 260 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEVREKKDEK MEMERRKSSA NPQILDHRLP PYTYPQTSDK EKPTSKRNGS DPVPDPDLDT 60 SPISVAPVPR SYVRPRATSP SKSVRYRECQ RNHAASSGGH VVDGCGEFMS SGEEGTAESL 120 LCAACDCHRS FHRKEIDGMF VVKFNSLGHS QRPIVSRHVS PIMMSFGGGG GGRDPAESST 180 EDLNKLHQSF SGNGVDQFQY HPKKRFRTKF NQEQKEKMME FAEKIGWRLS KPEDEEVNRF 240 CREINVKRQV FKVWMHNNKQ AAKNKDM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 204 | 262 | 18 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022806m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006409164.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 1e-154 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | V4M6J5 | 0.0 | V4M6J5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409164.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6515 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-140 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022806m |
Entrez Gene | 18026377 |