PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022772m
Common NameEUTSA_v10022772mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 343aa    MW: 38362.3 Da    PI: 5.1544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022772mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09198244555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Thhalv10022772m 198 HSLAERARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 244
                      999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-17191261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-9191248No hitNo description
PROSITE profilePS5088814.939193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17194262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6198244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLEGLVSPDS LSLSSMDMSV LERVKWLQKQ QQQEQVVSQS SNNSPELFQI LQFHGSNNDE  60
LLQSTFHHFQ MLGSDFGPNY NMGFGPNEAM DGCISRTSSC QMDQVDTMGI MLKSSDEDRA  120
VALKNKRKSE IKTKEEEKTE KKIKVEVETE SNMKGKSNMG NTEASSDTSK EISKGASESQ  180
KLDYIHVRAR RGQATDRHSL AERARREKIS KKMKYLQDLV PGCNKVTGKA GMLDEIINYV  240
QSLQRQVEFL SMKLAVLNPE LELAVEDLSV KQFQAYFTNL PVVVDSKPPI MVDVPLFPLD  300
QQGSLDLSVI NPNQTTSIEA PSASWETQSQ SLYNPSTIGF QY*
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022772m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409170.10.0transcription factor HBI1
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLE4MXZ40.0E4MXZ4_EUTHA; mRNA, clone: RTFL01-36-E14
TrEMBLV4MDQ70.0V4MDQ7_EUTSA; Uncharacterized protein
STRINGXP_006409170.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-169bHLH family protein