PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022660m
Common NameEUTSA_v10022660mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 493aa    MW: 54840.4 Da    PI: 6.6836
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022660mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.89.1e-093203571954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LA+++gLt  qV++WF N R +
  Thhalv10022660m 320 FEHflHPYPKDSDKIMLARQTGLTRGQVSNWFINARVR 357
                      554459******************************88 PP
2BELL1276.9e-41182253172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+k +kLls+l+eVd++Ykqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  Thhalv10022660m 182 ERQELQSKLSKLLSILDEVDRKYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 253
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-67122251IPR006563POX domain
PfamPF075261.2E-46128250IPR006563POX domain
Gene3DG3DSA:1.20.5.3501.1E-4137202No hitNo description
SuperFamilySSF902505.49E-5139202No hitNo description
PROSITE profilePS5007111.564298361IPR001356Homeobox domain
CDDcd000861.31E-11301362No hitNo description
SMARTSM003895.3E-9301365IPR001356Homeobox domain
SuperFamilySSF466893.08E-17302368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27304367IPR009057Homeodomain-like
PfamPF059201.5E-17318357IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MATYYKSNGS SDIYSRPNLA EFVPGNAMIY TNPVVSYSET FPGEANNVSA SKEIQVLSSF  60
GGASQMMEIQ DSGSWRDQED NDRNSFPVMM RPTTGQRLSL GLSSQIETTR GNNNEYATQV  120
VSGFTRTIHN SKYLKAAQQL LDEAVNVKKA LKQFQPEGDK IDEEKEKTLQ ESCTNPDIPQ  180
GERQELQSKL SKLLSILDEV DRKYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISR  240
HFRCLRDAIS GQILVIRKSL GGEHDGLDGK GVGISRLRNV DQQVRQQRAL QRLGMMQPHT  300
WRPQRGLPDS SVLILRAWLF EHFLHPYPKD SDKIMLARQT GLTRGQVSNW FINARVRLWK  360
PMVEEMYKEE FTDALEENGP NLSSGNTPET IEVQEQQIES SSNNGQVSGV AMGQNTVACG  420
GDRFMMVRRS GSGGGMSLTL GIQNSDARGD VSMSGGRDNY ENAIPGTDFQ YLNSANHQHR  480
LGSSQMLHDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15307365563Homeobox protein Meis2
3k2a_B2e-15307365563Homeobox protein Meis2
4xrs_A2e-15307364158Homeobox protein Meis1
4xrs_B2e-15307364158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022660m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567960.0AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006090.0BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016509.10.0BEL1-like homeodomain protein 7
RefseqXP_024016510.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLV4M7810.0V4M781_EUTSA; Uncharacterized protein
STRINGXP_006409439.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]