PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022421m
Common NameEUTSA_v10022421mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 402aa    MW: 45856.9 Da    PI: 5.8692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022421mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-11353398447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      WT+eE + l d+vk++G+  Wk I +  +     Rt+ ++k++w+++
  Thhalv10022421m 353 WTPEEVQALRDGVKEYGKS-WKDIKKSNPlvfAARTEVNLKDKWRNL 398
                      *****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.207345401IPR017930Myb domain
SMARTSM007173.2E-6349401IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-12350399IPR009057Homeodomain-like
SuperFamilySSF466892.47E-12351398IPR009057Homeodomain-like
CDDcd116601.59E-15351399No hitNo description
PfamPF002493.4E-9352398IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGVIEIWVAE FVLRRHQNPR VYATSLFSAL KLDDCPKLKT SAVVRDMSNS LIRGQVDERM  60
LDLLEVLEKL QEDSVTMESL KSAYCWTAVE CTLRFMWPET ASDGFFGEAL ERIWGKRIGI  120
LKVRESDLVT PELLKWESDL KMAVEEPDMY QKIRETNIRY NAISHLNQLL KEQWALLGCS  180
SLELEARKWF LKRKDPNAAR ERGKHYGYSG EEVNDVEDTV NEQEQEREPS LDTVNEQEQE  240
HEPSLDKADI TVARELKDCL LEIIQGLVEP STRQGQENNN ATGLSSVDVS PQPDRANRTE  300
TGRGRAEDSQ GTSSSSLSGR VRPYLPTPKP LNVSSLKKDK PAKTGFKRPV RHWTPEEVQA  360
LRDGVKEYGK SWKDIKKSNP LVFAARTEVN LKDKWRNLIG R*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022421m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408414.10.0uncharacterized protein LOC18023821
TrEMBLV4M4I20.0V4M4I2_EUTSA; Uncharacterized protein
STRINGXP_006408414.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-162TRF-like 5