PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022306m
Common NameEUTSA_v10022306mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 313aa    MW: 35797.4 Da    PI: 9.0418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022306mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000278100223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ Cgk F+    L++H +  H
  Thhalv10022306m  78 RCEECGKGFRYEKCLTKHRKGmH 100
                      7*****************99777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01577100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.00977105IPR007087Zinc finger, C2H2
SuperFamilySSF576676.81E-777100No hitNo description
Gene3DG3DSA:3.30.160.604.9E-47997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028079100IPR007087Zinc finger, C2H2
SuperFamilySSF576676.81E-7279306No hitNo description
SMARTSM003551.8284306IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891284311IPR007087Zinc finger, C2H2
PfamPF139125.6E-6284306IPR007087Zinc finger, C2H2
PROSITE patternPS000280286306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDHQEFEKP IFELRHKKFR STRFLIYSEK KNRLGESMNQ YEEISCYYGL RENPKKTQKS  60
PLDDRLGTRA SNKKRLIRCE ECGKGFRYEK CLTKHRKGMH SLNQKKSDYE ESMIRSADLL  120
CCFSDVQRRK RSKRVSRYKK IPRFSVSSSS SVSEYDGELL EVAESLILLS KSVEALVSNP  180
GLNLREFEDG FLGNEQKLVG KSPAADGSLS TESDGNPKEL LGFLGDNKAD ESCQVGAGRF  240
RAEAGLERVS LVYRPGLILQ NAKTDIQQKL DGQETNSGDE GTEHRCRLCD RVFLTYQALG  300
GHQTFHRMRN KPE
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022306m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408453.20.0LOW QUALITY PROTEIN: uncharacterized protein LOC18023566
TrEMBLV4NT630.0V4NT63_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006408453.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.16e-18C2H2 family protein