PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022304m
Common NameEUTSA_v10022304mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CPP
Protein Properties Length: 367aa    MW: 41347.2 Da    PI: 8.069
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022304mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.1e-1471110242
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      ++kgC+C++skClk+YC+Cfa+g+ C++ C C dC+N++++
  Thhalv10022304m  71 KHKGCRCRQSKCLKLYCDCFASGVLCND-CDCGDCHNNSKN 110
                      789*************************.********9875 PP
2TCR49.39.9e-16155192441
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +gC+Ck++kClkkYCeCf+a+  Cs++CkC +CkN +e
  Thhalv10022304m 155 RGCKCKRTKCLKKYCECFQANLLCSDNCKCINCKNVSE 192
                      79*********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-1570110IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.33771192IPR005172CRC domain
PfamPF036381.3E-1173107IPR005172CRC domain
SMARTSM011141.1E-15152193IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.7E-12155190IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MICKVDSGAI ATKKNPRELV FTKLELSPVV LESPVRELAL FPPISRYCSK EPLATPGTKD  60
KTDQEGITWR KHKGCRCRQS KCLKLYCDCF ASGVLCNDCD CGDCHNNSKN CDLREAAVMS  120
VLDRKPNAFS EKHFSSKIDK QYKAAPDTKL GVLSRGCKCK RTKCLKKYCE CFQANLLCSD  180
NCKCINCKNV SEEIQPSRNS CPAPLSSIPD NFILNSLGSP MYSSPKLPYR KKRSRLGYTT  240
TTRLPDFGDI RSLLLAASES AIANAVNIPV LEQQSDQNRI CKKPDDKEDI NDNELSNESE  300
SSNVEDDIQS CGRLIELIDA QYNGEEDSHY KTKKSGHDTD IYMEQERAVL ETFRDCLHKY  360
IKIKFIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-19701929123Protein lin-54 homolog
5fd3_B4e-19701929123Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022304m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304951e-119AJ630495.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g16160.
GenBankDQ6530891e-119DQ653089.1 Arabidopsis thaliana clone 0000013135_0000009456 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015245.10.0protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-173TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLV4M7I20.0V4M7I2_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006406870.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-145Tesmin/TSO1-like CXC domain-containing protein