PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 240aa MW: 27578.6 Da PI: 4.5499

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10022235m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.9	1.1e-20	30	83	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fek++++ e++++LAkklgL+ rqV vWFqNrRa++k Thhalv10022235m 30 KKRRLTTEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 83 56789************************************************9 PP
2	HD-ZIP_I/II	131.1	4.2e-42	29	121	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ ke++ Lr+++++ Thhalv10022235m 29 EKKRRLTTEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDLLKSTYDQLLSNYDSIVKENDLLRSQMAS 121 69**************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.12E-20	17	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.285	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.0E-19	28	89	IPR001356	Homeobox domain
Pfam	PF00046	8.7E-18	30	83	IPR001356	Homeobox domain
CDD	cd00086	1.35E-18	30	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-22	31	92	IPR009057	Homeodomain-like
PRINTS	PR00031	3.3E-6	56	65	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	60	83	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.3E-6	65	81	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.8E-15	85	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001558	Biological Process	regulation of cell growth
GO:0009637	Biological Process	response to blue light
GO:0009651	Biological Process	response to salt stress
GO:0009965	Biological Process	leaf morphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDETSKRRPF FSSPEDLYEE EYYDDQMPEK KRRLTTEQVH LLEKSFEKEN KLEPERKTQL 60 AKKLGLQPRQ VAVWFQNRRA RWKTKQLERD FDLLKSTYDQ LLSNYDSIVK ENDLLRSQMA 120 SLAEKLQAKE EAAIEPPGQV PEPNQLDPLN INRFEPAIKT EDRLSSGSVG SAVLDEDAPQ 180 LLDSCDSYFP IIVPIHSEDD NNYNNPGTAN DRSCFADVFV PTTSPSHDHG ESLGFWGWP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	85	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00323	DAP	Transfer from AT3G01470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10022235m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352854	0.0	AK352854.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-H09.
GenBank	AK353535	0.0	AK353535.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408508.2	1e-177	homeobox-leucine zipper protein HAT5
Swissprot	Q02283	1e-133	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	E4MWF7	1e-176	E4MWF7_EUTHA; mRNA, clone: RTFL01-08-H09
TrEMBL	V4NTB7	1e-176	V4NTB7_EUTSA; Uncharacterized protein
STRING	XP_006408508.1	1e-177	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8884	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-126	homeobox 1

Link Out ? help Back to Top
Phytozome	Thhalv10022235m
Entrez Gene	18024319

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]