PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

ERF

Protein Properties

Length: 136aa MW: 15299.8 Da PI: 5.0581

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10022200m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.2	4.8e-19	12	63	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrd ++ +r++lg+f tae+Aa+a+++a+ +++g+ Thhalv10022200m 12 KYRGVRKRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEDAARAYDRAAFAMRGH 63 8******.******....33236************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.94E-17	12	71	No hit	No description
PROSITE profile	PS51032	23.696	12	70	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.0E-32	12	72	IPR001471	AP2/ERF domain
Pfam	PF00847	2.9E-14	12	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.75E-23	12	72	IPR016177	DNA-binding domain
SMART	SM00380	2.1E-35	12	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-11	13	24	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-11	36	52	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MEHRESNKNE VKYRGVRKRP WGKYAAEIRD SARHGARVWL GTFNTAEDAA RAYDRAAFAM 60 RGHRAILNFP HEYPMMRDGP SGGIVASSSP SEFRGGDGGG ENEVIEFEYL DDSLLEELLE 120 CGESYNQDVW NEANR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-34	12	114	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00373	DAP	Transfer from AT3G23220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10022200m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB025608	2e-79	AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBank	AY974196	2e-79	AY974196.1 Arabidopsis thaliana clone At3g23220 AP2/EREBP transcription factor mRNA, complete cds.
GenBank	CP002686	2e-79	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406064.1	2e-96	ethylene-responsive transcription factor ERF095
Swissprot	Q9LTC6	4e-44	ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBL	V4LYD7	4e-95	V4LYD7_EUTSA; Uncharacterized protein
STRING	XP_006406064.1	7e-96	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	6e-39	ERF family protein

Link Out ? help Back to Top
Phytozome	Thhalv10022200m
Entrez Gene	18025065

Publications ? help Back to Top
Quan R, et al. EIN3 and SOS2 synergistically modulate plant salt tolerance. Sci Rep, 2017. 7: p. 44637 [PMID:28300216]