PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022166m
Common NameEUTSA_v10022166mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CPP
Protein Properties Length: 560aa    MW: 61064.9 Da    PI: 5.4379
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022166mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.91.3e-15432470240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+C+C+kskClk+YC+Cfaag++C e C+C++C+N+ 
  Thhalv10022166m 432 SCKRCRCRKSKCLKLYCDCFAAGVYCIEPCSCQNCFNRP 470
                      589**********************************85 PP
2TCR52.78.4e-17518556240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +++gCnCkks ClkkYCeC+  g+ Cs +C+C +C+N  
  Thhalv10022166m 518 HTRGCNCKKSGCLKKYCECYLMGVGCSPSCRCIGCMNIL 556
                      889**********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180186198IPR018247EF-Hand 1, calcium-binding site
SMARTSM011141.8E-17431472IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.985432557IPR005172CRC domain
PfamPF036384.0E-11434469IPR005172CRC domain
SMARTSM011143.1E-17517558IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-12520554IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDTPEKNRVS AVSFCSFEDS PVFQYINGLS PIEPVKAEHA DNILHSLDFA SPSSLFSSPQ  60
MNSCRDSRFS IKRHRSLDLS SPVILLGENV KSSPDVLEGV KISGLCEEQL KCRPEQLENV  120
SETKPFKEQV SLAIELANSL TNGKDGCDIR MVSCDEVATM DAEKEIGSFG SRKQSDELCR  180
QPNELDADSD GVIQTEDLEA EIGSCAGLKL FDVAGIQNSE KEILQAKDPR FNSFTSAPQQ  240
LSICCNNSGN VVEPGGSSSV LVAVGVPDSP LSSSSNVAAI DSTANAEDKK EAGIQPSHKQ  300
RSVRRRCLTF GVGGSYKRIP LRDSSNDLPP DFTSLNRAPN PHKCLDSSKQ DTDEILPIPR  360
TIGLHLNSLV NPSVSSYQIK LISKEGCVLS HGEDECSTPV STNRDLVSCD NKTMEKAPAS  420
SLEGEWSEEL GSCKRCRCRK SKCLKLYCDC FAAGVYCIEP CSCQNCFNRP IHEDIVMKTR  480
RMIEDRNPLA FAPKVISTSD SATDFGEESR KTPASARHTR GCNCKKSGCL KKYCECYLMG  540
VGCSPSCRCI GCMNILDHTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-214245551121Protein lin-54 homolog
5fd3_B9e-214245551121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022166m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408142.20.0protein tesmin/TSO1-like CXC 4
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLV4LGG00.0V4LGG0_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006408142.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.10.0Tesmin/TSO1-like CXC domain-containing protein