PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022126m
Common NameEUTSA_v10022126mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 387aa    MW: 43401.8 Da    PI: 10.0237
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022126mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-203780750
                     HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     s + ++++kR+++++KKA+ELS+LC+++v+vi ++ +g+l++++
  Thhalv10022126m 37 SSKATSLAKRQETVFKKAYELSTLCGTDVCVISYGLDGELKTWP 80
                     6788***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-41782IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-1434114IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.4653683IPR002100Transcription factor, MADS-box
PfamPF003194.7E-133779IPR002100Transcription factor, MADS-box
CDDcd002662.56E-1537107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MASSSSSSFS HSSSSPTNKK TTKFSKIQQT LFQKPSSSKA TSLAKRQETV FKKAYELSTL  60
CGTDVCVISY GLDGELKTWP EDRKKVEAMA RSYKSLDIKK RLKGQVDLRQ FLKKINKGDS  120
NTKKKKKVAS GSSDKYPDWD PRFNNYSVEQ LTLLIQSLER SLTTMQHRLR ALAESQKQRQ  180
NMHNTNMAHQ EQMITTTTAA LNHLHQHSNQ VPMDLFNQAM YGASSQIPPS ASSFNQAQSL  240
APIPNSLTIY QNPLTMYPNL NVESYLRGLQ GTGMSEFPSK NMLPYNNINN NNNNSVNGFP  300
KQFYQNGKVE DYSGYLGLQE TGINNMNDYP GLLWAQGIGI NGLQNMDMYG YNNSNINTNG  360
LSNQLVQFPT QRAEPVFQYG SINPKF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022126m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406581.10.0agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-104AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLV4LW470.0V4LW47_EUTSA; Uncharacterized protein
STRINGXP_006406581.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.17e-91AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]