PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

ERF

Protein Properties

Length: 139aa MW: 16000.4 Da PI: 9.3291

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10022108m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.3	5.3e-20	20	71	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps ng +r +lg++ tae+Aa+a+++a+ +l+g+ Thhalv10022108m 20 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTYETAEDAARAYDRAAFNLRGH 71 69*****.******98887..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.59E-17	19	79	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.0E-31	20	80	IPR001471	AP2/ERF domain
Pfam	PF00847	2.7E-14	20	71	IPR001471	AP2/ERF domain
SMART	SM00380	4.2E-36	20	84	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.487	20	78	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-23	20	79	IPR016177	DNA-binding domain
PRINTS	PR00367	1.4E-10	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MEGSSNRRSN SQSQDDKQAR FRGVRRRPWG KFAAEIRDPS RNGARLWLGT YETAEDAARA 60 YDRAAFNLRG HLAILNFPNE YYSRMDDYSL RPPYSSSSSS SSTSAGVSRQ SQREVFEFEY 120 LDDRVLEELL DSDERKKR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-31	17	125	11	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10022108m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406063.1	1e-95	ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	2e-71	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	V4NM88	2e-94	V4NM88_EUTSA; Uncharacterized protein
STRING	XP_006406063.1	4e-95	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	3e-52	ERF family protein

Link Out ? help Back to Top
Phytozome	Thhalv10022108m
Entrez Gene	18025064

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]