PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GATA

Protein Properties

Length: 202aa MW: 22306.1 Da PI: 9.7989

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10022088m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.4	2e-18	159	195	1	35
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC++ +Tp+WRrgp g+ktLCnaCG+++rk+++ Thhalv10022088m 159 CTnmNCNAVTTPMWRRGPLGPKTLCNACGIKFRKEEE 195 55559*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.2E-7	155	201	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.98E-11	157	195	No hit	No description
Pfam	PF00320	7.8E-16	159	195	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.3E-13	162	195	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.23E-11	163	192	No hit	No description
PROSITE profile	PS50114	11.754	163	191	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MENELDLTLR LGLPSPVVET ELSLNTSSTN QQGIIVNGGR RENNNDGGEI YRRRRILREE 60 DNANVHIRYY NLIFNHFAGI GETLNFNPYP MPQSPSSSSV PAPASSTGSD YVLIDVPARR 120 ARRNNSLVIE NALDANADVK RRRGCGGGCG GRIDGTRKCT NMNCNAVTTP MWRRGPLGPK 180 TLCNACGIKF RKEEERKSKR N*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10022088m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024015678.1	1e-113	GATA transcription factor 29
Swissprot	Q9LT45	3e-52	GAT29_ARATH; GATA transcription factor 29
TrEMBL	V4NMX3	1e-145	V4NMX3_EUTSA; Uncharacterized protein
STRING	XP_006406353.1	1e-146	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10652	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	5e-41	GATA transcription factor 29

Link Out ? help Back to Top
Phytozome	Thhalv10022088m
Entrez Gene	18024583

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]