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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10022070m | ||||||||
Common Name | EUTSA_v10022070mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 197aa MW: 23010.2 Da PI: 9.6794 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 84 | 125 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++e++e ++ + k++G + W++Ia + ++ +kq+ + ++y Thhalv10022070m 84 WSKEDHEWFLIGLKRFGDK-WDKIADLLD-TKNAKQVLIYAHNY 125 *****************99.*********.******98888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.6 | 1 | 55 | IPR017884 | SANT domain |
SMART | SM00717 | 0.01 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-8 | 4 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-5 | 80 | 128 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.929 | 80 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-9 | 82 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 83 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.88E-5 | 84 | 126 | No hit | No description |
Pfam | PF00249 | 8.7E-7 | 84 | 125 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAAKSWTREE NVQFKNALVK FSAFCPTRFQ SVAQYLQKSK VDVKERYKEM VKDLLEIGSS 60 RIAFAEGLTD AAAQRLYPVD ETIWSKEDHE WFLIGLKRFG DKWDKIADLL DTKNAKQVLI 120 YAHNYFYWQS AKKNVLKRRR VNIDNRMVEI IDVDSPPPEQ QENHHVLPQS QPQQRQIALA 180 IGHHAWSSYS EPHRRP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 140 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10022070m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407532.1 | 1e-146 | uncharacterized protein LOC18023769 | ||||
TrEMBL | V4LEW8 | 1e-144 | V4LEW8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407532.1 | 1e-145 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15934 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-21 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10022070m |
Entrez Gene | 18023769 |