PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022007m
Common NameEUTSA_v10022007mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 686aa    MW: 79660.4 Da    PI: 8.1937
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022007mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.14e-2069150389
             FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      Y++Y+ + GF++rk++ k++  ng++++  +vCskeg+r+e k k   ++ +++ tr+gCka+++  ++k+g++++ +++ +HnH+l
  Thhalv10022007m  69 YKNYGGKHGFNIRKQRRKTK--NGKVVRLLYVCSKEGFRKEPKVK---QSYSQTITRCGCKAHMTCYLQKTGRFKIVSFDPNHNHDL 150
                      9************9986665..999****************9877...89999********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1769150IPR004330FAR1 DNA binding domain
PfamPF105519.0E-37202296IPR018289MULE transposase domain
PROSITE profilePS509669.433471518IPR007527Zinc finger, SWIM-type
SMARTSM005750.0022493520IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
VKEDDLISED EDEDLVPEFE EKEDDIGDKK DYVRTEEVFA LEANKETEKK DELCIGMEFS  60
SDETAHMAYK NYGGKHGFNI RKQRRKTKNG KVVRLLYVCS KEGFRKEPKV KQSYSQTITR  120
CGCKAHMTCY LQKTGRFKIV SFDPNHNHDL GDAGAVLEYF QRKKEDNSSF FYSMQLDEDD  180
MITNIFWADD RSISDYNLFG DVVCFDTTYK TNEYDRPFAP FIGVNHHKQT VVFGAALLYD  240
ETTESFKWLF ETFLGAMSGK QPKTILTDQS AAMANAIVNV FPETKHRLCV WHIYQNAAKK  300
LSHVFHGAEQ FATDFGKCVY DHEEEEDWLL AWHDMLKKHK LTEDKWLKNL FEVREKWAMV  360
YGRQTFTADM VSTQRSESMN NILKKYLRHS YDLLSFFKQY ERVLDDRRYK ELTADFNMMH  420
TSPVLSATVE MLQHAEEVYT PEVFTLFQKQ YAVIGDYVAK KVSKSNMVYE YKVSYRGEAR  480
EHLVSYDATN QIIHCSCMKY SFAGILCRHT LKVLDKKNVR RIPSNYILNR WSKKAKARII  540
SSYCSEKPNE TVNQSIGKRY SHLCRNFRDI ASVAAEHIEL TLCANEAASQ LLKTLEENKK  600
ELVKANAWML PTSDVKHVEE EEKDYNEVPN ARGIKRKASV GRPKNQKVGP HGRYLNVLEV  660
KKRGSSKSSN ITTAKKKLSF QVFDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022007m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445346.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4M6020.0V4M602_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006406280.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-108FAR1-related sequence 5