PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021963m
Common NameEUTSA_v10021963mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 399aa    MW: 43225.7 Da    PI: 5.5094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021963mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-1859104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v+++G ++W++Iar ++ gR++k+c++rw + 
  Thhalv10021963m  59 KGPWSPEEDVVLSELVEKFGARNWSLIARSIP-GRSGKSCRLRWCNQ 104
                      79******************************.***********985 PP
2Myb_DNA-binding51.32.6e-16111155147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+ Ed+ ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  Thhalv10021963m 111 RNSFTEVEDQAIITAHAIHGNK-WAVIAKLLP-GRTDNAIKNHWNST 155
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.61454109IPR017930Myb domain
SuperFamilySSF466891.05E-3057152IPR009057Homeodomain-like
SMARTSM007171.2E-1558107IPR001005SANT/Myb domain
PfamPF002493.4E-1759104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2560112IPR009057Homeodomain-like
CDDcd001679.68E-1561103No hitNo description
SMARTSM007173.7E-16110158IPR001005SANT/Myb domain
PROSITE profilePS5129420.054110160IPR017930Myb domain
PfamPF002491.3E-14111155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-23113159IPR009057Homeodomain-like
CDDcd001672.83E-12113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEGETGRRSE TTELGDVEEA AFAGGRGDGD GGGGSAGEGD AARFVGEGTR GRGGKERIKG  60
PWSPEEDVVL SELVEKFGAR NWSLIARSIP GRSGKSCRLR WCNQLDPSVK RNSFTEVEDQ  120
AIITAHAIHG NKWAVIAKLL PGRTDNAIKN HWNSTLRRRY MDIENPTTNI GTGNLVPEDT  180
GFDRTTNTIA SSEETFSSGG GGHATTPLVS SEGKEATSME MSEEQCVDKT NGEGISRKEG  240
NDPPTLFRPV ARLSSFNVRN HIEGFSSPHM HEKNQFQSSK QDTAMLRLLE GAYSEKFVPQ  300
KCGRGCCSND PVGIYQQDSL LGPEFVDYLD PPTFPSYELA AIATDISSLA WLRSGLESSS  360
VRAMEEAAGR LRPQGSRGHR DHYLVSEQGK NITNVLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-40531591107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021963m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5502950.0AY550295.1 Arabidopsis thaliana MYB transcription factor (At3g09230) mRNA, complete cds.
GenBankBT0264290.0BT026429.1 Arabidopsis thaliana At3g09230 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407701.10.0transcription factor MYB1
SwissprotQ425750.0MYB1_ARATH; Transcription factor MYB1
TrEMBLV4LZ710.0V4LZ71_EUTSA; Uncharacterized protein
STRINGXP_006407701.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.10.0myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]