PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021958m
Common NameEUTSA_v10021958mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 573aa    MW: 67164 Da    PI: 9.6866
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021958mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91.1e-201395390
             FAR1  3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                     Y++Y+ + GF++rk++ k++  ng++++  +vCskeg+r+e k k   ++ +++ tr+gCka+++  ++k+g++++ +++ +HnH+l+
  Thhalv10021958m 13 YKNYGGKHGFNIRKQRRKTK--NGKVVRLLYVCSKEGFRKEPKVK---QSYSQPITRCGCKAHMTCYLQKTGRFKIVSFDPNHNHDLV 95
                     9************9986665..999****************9877...9999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-181395IPR004330FAR1 DNA binding domain
PfamPF105516.9E-37206300IPR018289MULE transposase domain
PROSITE profilePS509669.409463510IPR007527Zinc finger, SWIM-type
SMARTSM005750.0022485512IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MEFSSDETAH MAYKNYGGKH GFNIRKQRRK TKNGKVVRLL YVCSKEGFRK EPKVKQSYSQ  60
PITRCGCKAH MTCYLQKTGR FKIVSFDPNH NHDLVMTPMK HLLKSNRAFS LAQTKHADDA  120
EMSGISAKAT VEMMSREKDY RNYIYRKRME KMEKGDAGAV LEYFQRKKED NSSFFYSMQL  180
DEDDMITNIF WADDRSISDY NLFGDVVCFD TTYKTNEYDR PFAPFIGVNH HKQTVVFGAA  240
LLYDETTESF KWLFETFLGA MSGKQPKTIL TDQSAAMANA IVNVFPETKH RLCVWHIYQN  300
AAKKLSHVFH GAEKEERKIW LLAWHDMLKK HKLTEDKWLK NLFEVREKWA MVYGRQTFTA  360
DMVSTQRSES MNNILKKYLR RSYDLLSFFK HYERVLDDRR YKELTADFNM MHTSPVLSAT  420
VEMLQHAEEV YTPEVFTLFQ KQYAVIGDYV AKKVSKSNMV YEYKVSYHGE AREHLVSYDA  480
TNQIIHCSCM KYSFAGILCR HTLKVLDKKN VRRIPSNYIL NRWSKKAKAR IISSYCSEKP  540
NETVNQSIGK RYSHLCRNFR DIASVAAEHI ELT
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021958m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116657.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLV4LV710.0V4LV71_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006406281.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-127FAR1-related sequence 5