PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021932m
Common NameEUTSA_v10021932mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 365aa    MW: 41259.5 Da    PI: 6.7115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021932mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-05204223120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  Thhalv10021932m 204 FSCPLCFKTFNRYNNMQMHM 223
                      89*****************9 PP
2zf-C2H212.90.00033288310123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  Cgk F  k + ++H +++
  Thhalv10021932m 288 FACRRCGKAFAVKGDWRTHEKNC 310
                      78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-5204223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SuperFamilySSF576673.26E-6274308No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5275308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767288308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSDPACILNN GYVDYYDYRF NYSTSLSHIY DSHGSFYYPH NTTNPIINTE KPNSTLPDSP  60
PLREALPLLS LSPIHKNQEP IVHPHEFYFM ETTETSSNSN CLDHDLDQSH HHDVTVDLHL  120
GLANLSGDAI AYGGGGSSSS DVILDSTDQE HHHDHHQDRH QDQGAEVTLA SDHDDGYGGV  180
QRGNHHHHYW IPTPSQILMG PTQFSCPLCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT  240
QPTAMLRLPC YCCAPGCKNN IDHPRARPLK DFRTLQTHYK RKHGARPFAC RRCGKAFAVK  300
GDWRTHEKNC GKLWYCSCGS DFKHKRSLKD HVKAFGDGHF PCFGIDCSGD HEDEDAASDV  360
EQQE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021932m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406336.10.0zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLV4LVB80.0V4LVB8_EUTSA; Uncharacterized protein
STRINGXP_006406336.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]